ATUM Sectioning Left Facing 400x400


High resolution microscopes used for research, including Transmission Electron Microscopy (TEM), Scanning Electron Microscopy (SEM), Atomic Force Microscopy (AFM), Scanning Probe Microscopy and Fourier-Transform Infrared Spectroscopy (FTIR), require samples that are imaged at the nano scale. Ultramicrotomes are used to cut the ultrathin sections that allow this. This class of microtomes can produce samples from a few to 150 nanometre thickness.


Normal microtomes are used to prepare microscopic samples by cutting thin slices of micrometre thickness off a sample, which is often embedded in a resin. However, low power electrons used in TEM cannot penetrate biological material of more than 150 nanometre. This is where the ultramicrotome comes in. Using a high quality glass or diamond knife, this instrument will produce ultra-thin sections suitable for nanoscale study by TEM, SEM and other high resolution microscopy.


ST Instruments offers a range of ultramicrotomes from RMC Boeckeler for ultrathin sectioning, which can be fitted with add-ons for extra versatility.

PowerTome Series


♦   PowerTome 3D | Best choice for 3D construction work & array tomography

♦   PowerTome PCZ | Ultramicrotome for research & education

♦   PowerTome PC | Computer control for added user convenience

♦   PowerTome XL | Precision & Performance for the efficient EM Lab



♦   ATUMtome | Automated Tape Collecting Ultramicrotome

Cryo Ultramicrotomy


♦   LN Ultra  | Cryo Attachment for PowerTome series

Advanced Substrate Holder – ASH2


♦    ASH2 | Advanced Substrate Holder

How does Ultramicrotomy work?

The cutting mechanism of an ultramicrotome consists of a sample holder on a sample arm, and a knife holder which holds both the knife and a water-filled trough called a ‘boat’, in which the sliced samples are collected. The samples are sliced on the stationary knife by the highly controlled movement of the arm. The sample arm is moved down and up again to make a cut, while the advance of the arm decides the thickness.


Sample preparation depends on the material under investigation. Ultramicrotomy is not only used for biological samples, but also for a range of other materials like rubber and plastics as well as ceramics or metals. In order to prevent deformation, the sample is often embedded in a ‘block’ of supporting resin. Samples can also be frozen, and cut using a cryo-attachment.


The ultramicrotome has a trim function that will trim the block face to a size suitable for the user’s initial evaluation, typically in the square millimetre range. When the most promising area for cutting ultrathin sections is thus identified, the block is further reduced before samples are cut. By cutting it in a trapezoid shape, the orientation of the sections can be easily established.


Samples are collected from the water surface in the knife boat, and transferred on a grid to the TEM, SEM or other high resolution microscope for imaging.

Why use Ultramicrotomy?

There are other methods to reduce samples to nanometre thickness, like ion beam or other processing techniques, but none of these produce samples that match those prepared by ultrathin sectioning in clearness of the surfaces or production speed. For nanoscale research using electron microscopy, ultramicrotomy is the method of choice.


The RMC Boeckeler microtomes can also provide automated sectioning, the MT990 rotary microtome features a motorized, programmable, consistent cutting speed. The motor drive will also reduce the strain of repetitive, high output histology sectioning. The rotary microtome can be used both for hands-off or manual operation.


After ultramicrotomy, most sections require contrasting, often by the application of lead and uranyl salts. To apply them in a safe and healthy environment, RMC Boeckeler provides an automated electron microscopy stainer, capable of contrasting up to 40 grids in one run. A special unit is also available for freezing samples and processing them under cryo conditions. This often yields superior structural morphology and improved immunolabelling over routine resin embedding. For routine tissue processing and resin embedding, an automatic microscopy tissue processor can be used. This unit will be available soon.

Applications of Ultramicrotomy

PowerTome XL
Park et al. obtained electron microscopy images from the SARS-CoV2 virus in the first Korean patient using the RMC Boeckeler PowerTome MT-XL. In order to observe virus particles, they fixed a Vero cell monolayer infected with material from the patient and cut the virus-loaded cells on the ultra-microtome at 65 nm.


Park et al., J Korean Med Sci. Feb 24 2020 DOI 10.3346/jkms.2020.35.e84

Automated tape-collecting ultramicrotomy
Kislinger et al used RMC Boeckeler automated tape-collecting ultramicrotomy in combination with focused ion-beam scanning electron microscopy to perform volumetric assessment of brain tissue in mice. They combined light microscopy and electron microscopy to obtain fast nanometre resolution and 3D imaging of preselected structures. This demonstrated the potential of this technique to reveal the ultrastructure of rare but pathologically important events by identifying microglia contact sites with amyloid plaques in a mouse model of familial Alzheimer’s disease.


Kislinger et al., iScience 23, July 24 2020, DOI 10.1016/j.isci.2020.101290

Cryo attachement
Vieira et al. used the RMC Boeckeler PowerTome PC Ultramicrotome with the cryo attachment to produce 200 nm thick sections of a nanocomposite membrane composed of PVDF (poly vinylidene fluoride) with nitrogen-doped reduced graphene oxide. TEM and SEM images were used to in order to estimate the average number of stacked graphene layers in the PVDF membrane.


Vieira et al., Chem Eng J, 03 July 2020, DOI 10.1016/j.cej.2020.126117